Introduction to FLasher
FLasher reference manual
effort_max argument to fwd() set a maximum valuw for effort. Similar to FLash::maxF, as scale of effort values in fwd(FLStock) is set by fbar.
Certain slots in FLStock are checked for NAs in year before projection to avoid R crashing.
New stock-recruitment relationship added, survsrr, for low fecundity species (Taylor et al, 2013).
Projections are now correct for multiple units, either sex or birth seasons.
The residuals argument to fwd() is now called ‘deviances’, and this name is used in all R and C++ code. ‘residuals’ is still accepted, but will be deprecated in the next minor version.
SRR predictions now work correctly for 2-sex OMs (FLStock or FLBiol).
Check for fwdControl rows not being all NA.
plot(FLStock, fwdControl) will add to the ggplotFL plot of an FLStock a coloured area of the years being projected.
fwd(FLStock) now returns one more year if quant=‘ssb_flash’ and object has space for it.
Added disc.nyears arg to stf() to select years to use for discards ratio calculations.
If min and max for the very same target are set in separate rows, they are merged.
Fixed stupid intermittant bug in projection test
Added stf to Namespace
Fixed bug setting relMinAge etc and added simple projection tests
Fixed coerce FLQuant to fwdControl with iters
Edits to mixed fishery vignette and new introductory vignette