Tue, 24 Apr 2012 04:31:58 +0200 FLcore bugs http://www.flr-project.org/bugs/ Laurie Kell Thu, 24 Mar 2011 08:42:43 +0100
this works
pmin(1:2/FLPar(1),0)
[1] 0 0

but this doesn´t

pmin(1/FLPar(1:2),0)
Error in checkSlotAssignment(object, name, value) :
assignment of an object of class "logical" is not valid for slot ".Data" in an object of class "FLPar"; is(value, "array") is not TRUE
Calls: pmin -> > -> > -> @ slot checkSlotAssignment

]]> http://www.flr-project.org/bugs/index.php?do=details&task_id=45 http://www.flr-project.org/bugs/index.php?do=details&task_id=45 Laurie Kell Tue, 25 Jan 2011 10:50:20 +0100 http://www.flr-project.org/bugs/index.php?do=details&task_id=44 http://www.flr-project.org/bugs/index.php?do=details&task_id=44 Laurie Kell Tue, 25 Jan 2011 10:48:30 +0100 data(ple4)
plot(ple4)

this is because coercion of data.frame for rec & ssb does

rbind(as.data.frame(ssb(ple4)),as.data.frame(rec(ple4)))

although

rbind(as.data.frame(rec(ple4)),as.data.frame(ssb(ple4)))

doesn´t]]> http://www.flr-project.org/bugs/index.php?do=details&task_id=43 http://www.flr-project.org/bugs/index.php?do=details&task_id=43 Laurie Kell Mon, 06 Dec 2010 17:09:07 +0100 http://www.flr-project.org/bugs/index.php?do=details&task_id=42 http://www.flr-project.org/bugs/index.php?do=details&task_id=42 Laurie Kell Tue, 26 Oct 2010 09:44:51 +0200
While if you have an FLstock object with iterations the range is not set by the interquartile range but the actual data e.g.

plot(ple4)

stock.n(ple4[[1]])]]> http://www.flr-project.org/bugs/index.php?do=details&task_id=41 http://www.flr-project.org/bugs/index.php?do=details&task_id=41 Laurie Kell Tue, 26 Oct 2010 09:38:47 +0200
However, the syntax for the logliklihood and gradient functions are different e.g.

obj]]> http://www.flr-project.org/bugs/index.php?do=details&task_id=40 http://www.flr-project.org/bugs/index.php?do=details&task_id=40 Laurie Kell Mon, 18 Oct 2010 08:50:01 +0200

> FLPar(array(1:6,c(3,2,1)))
An object of class "FLPar"

params 1 2
a 2 5
b 5 2
c 2 5
units: NA NA NA
> FLPar(array(1:6,c(3,2,1)))@.Data
, , iter = 1


params 1 2
a 1 4
b 2 5
c 3 6



Laurie]]> http://www.flr-project.org/bugs/index.php?do=details&task_id=39 http://www.flr-project.org/bugs/index.php?do=details&task_id=39 Laurie Kell Fri, 01 Oct 2010 14:33:59 +0200
> data(ple4.indices)
> data(ple4)
> pleXSA qapply(FLAssess(), quant)
$catch.n
[1] "quant"

$stock.n
[1] "quant"

$harvest
[1] "quant"

> qapply(FLQuant(), quant)
Error in function (classes, fdef, mtable) :
unable to find an inherited method for function "qapply", for signature "FLQuant", "standardGeneric"
> FLQuant()
An object of class "FLQuant"
, , unit = unique, season = all, area = unique

year
quant 1
all NA

units: NA ]]> http://www.flr-project.org/bugs/index.php?do=details&task_id=38 http://www.flr-project.org/bugs/index.php?do=details&task_id=38 Laurie Kell Mon, 27 Sep 2010 12:49:13 +0200
setMethod('rec', signature(object='FLStock'),
# function(object, rec.age=ac(dims(object)$min))
function(object, rec.age=object@range["min"])
{
if(dims(object)$quant != 'age')
stop("rec(FLStock) only defined for age-based objects")
res ]]> http://www.flr-project.org/bugs/index.php?do=details&task_id=37 http://www.flr-project.org/bugs/index.php?do=details&task_id=37 Alex Hanke Wed, 22 Sep 2010 19:52:54 +0200 The readFLStock() function can be used to read in stock and CPUE data used to conduct stock assessment. The 'ICCAT Adapt file' format is supported by specifying type='Adapt'. The 'Adapt file format' consists of a single file of input data containing the biological parameters, catches and catch per unit effort data and it typically carries the *.d01 file extension.
Sample Code:
path2]]> http://www.flr-project.org/bugs/index.php?do=details&task_id=36 http://www.flr-project.org/bugs/index.php?do=details&task_id=36